build.REACTOME: Build REACTOME db

In MetaDBparse: Annotate Mass over Charge Values with Databases and Formula Prediction

Description

Parses the REACTOME db, returns data table with columns compoundname, description, charge, formula and structure (in SMILES)

Parses the METABOLOMICSWORKBENCH db, returns data table with columns compoundname, description, charge, formula and structure (in SMILES)

Usage

build.REACTOME(outfolder)

build.METABOLOMICSWORKBENCH(outfolder)

Arguments

outfolder

Which folder to save temp files to?

Value

data table with parsed database

data table with parsed database

See Also

as.data.table html_nodes read_html

as.data.table html_nodes read_html

Examples

## Not run: build.REACTOME(outfolder=tempdir())
## Not run: build.METABOLOMICSWORKBENCH(outfolder=tempdir())

MetaDBparse documentation built on May 3, 2021, 5:09 p.m.