build.METACYC: Build METACYC
In MetaDBparse: Annotate Mass over Charge Values with Databases and Formula Prediction
Description
Usage
Arguments
Details
Value
See Also
Description
Parses METACYC, returns data table with columns compoundname, description, charge, formula and structure (in SMILES)
Usage
1
build.METACYC(outfolder)
Arguments
outfolder
Which folder to save temp files to?
Details
Requires account creation! Then download SmartTable from 'https://metacyc.org/group?id=biocyc17-31223-3787684059#' as 'All_compounds_of_MetaCyc.txt' and save in the databases/metacyc_source folder.
Value
data table with parsed database
See Also
getURL
str_match
fread
pbapply
MetaDBparse documentation built on May 3, 2021, 5:09 p.m.
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Description Usage Arguments Details Value See Also
Description
Parses METACYC, returns data table with columns compoundname, description, charge, formula and structure (in SMILES)
Usage
1 | build.METACYC(outfolder)
|
Arguments
outfolder |
Which folder to save temp files to? |
Details
Requires account creation! Then download SmartTable from 'https://metacyc.org/group?id=biocyc17-31223-3787684059#' as 'All_compounds_of_MetaCyc.txt' and save in the databases/metacyc_source folder.
Value
data table with parsed database
See Also
getURL
str_match
fread
pbapply
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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