PlotHeatMap: Plot a heat map

In MiRSEA: 'MicroRNA' Set Enrichment Analysis

Plot a heat map

Description

Plot a heat map for a microRNA(miRNA) set which co-regulate pathway

Usage

PlotHeatMap(miRlist,input.ds,input.cls)

Arguments

miRlist	A list of miRNA LIST result obtained from the MsReport function
input.ds	Input miRNA expression Affymetrix dataset file in GCT format
input.cls	Input class vector (phenotype) file in CLS format

Details

Plots a heatmap of a miRNA set in the expression matrix including phenotype vector and miRNA, sample and phenotype labels

Author(s)

Junwei [e-mail],Siyao Liu [e-mail]

See Also

PlotHeatMap, MsReport

Examples

## Not run: 
#get example data
#input.ds <- readLines("F:/lsy/xin data/GSE36915.gct")
#input.cls <- readLines("F:/lsy/xin data/GSE36915.cls")
input.ds <- GetExampleData("dataset")
input.cls <- GetExampleData("class.labels")

#get a list of miRNA list result
miRlist<-GetExampleData("miRList")
#Plot a heat map
PlotHeatMap(miRlist,input.ds,input.cls)

## End(Not run)

MiRSEA documentation built on May 29, 2024, 4:36 a.m.