PlotHeatMap: Plot a heat map

Description Usage Arguments Details Author(s) See Also Examples

View source: R/PlotHeatMap.R

Description

Plot a heat map for a microRNA(miRNA) set which co-regulate pathway

Usage

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PlotHeatMap(miRlist,input.ds,input.cls)

Arguments

miRlist

A list of miRNA LIST result obtained from the MsReport function

input.ds

Input miRNA expression Affymetrix dataset file in GCT format

input.cls

Input class vector (phenotype) file in CLS format

Details

Plots a heatmap of a miRNA set in the expression matrix including phenotype vector and miRNA, sample and phenotype labels

Author(s)

Junwei Han[email protected],Siyao Liu [email protected]

See Also

PlotHeatMap, MsReport

Examples

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## Not run: 
#get example data
#input.ds <- readLines("F:/lsy/xin data/GSE36915.gct")
#input.cls <- readLines("F:/lsy/xin data/GSE36915.cls")
input.ds <- GetExampleData("dataset")
input.cls <- GetExampleData("class.labels")

#get a list of miRNA list result
miRlist<-GetExampleData("miRList")
#Plot a heat map
PlotHeatMap(miRlist,input.ds,input.cls)

## End(Not run)

Example output



MiRSEA documentation built on May 29, 2017, 2:58 p.m.