envData: The variables in the environment include predefine pathway,...
In MiRSEA: 'MicroRNA' Set Enrichment Analysis
envData R Documentation
The variables in the environment include predefine pathway, target information of miRNAs,an expression profile and a example result of miRNA list
Description
The pathway information is download on the GSEA website,concluding three pathway database
(KEGG,Biocarta,Reactome).We arranged the data for miRNAs and their target genes,which is according to four database including miRTarBase,TarBaseV6.0,miRecords and mir2Disease.
example.GCT is an interesting miRNA expression data and example.cls is the vector of binary labels(class.labels)
p is a p value weighted matrix (rows are pathway ,cols are miRNAs).p2miR is a correlation profile between kegg pathways and each human miRNA.
miRList is a list of drawing parameters of KEGG ERBB signaling Pathway.
Format
An environment variable
Details
The environment variable includes the variable pathway, mfile,example.cls,example.gct,p,p2miR,miRList
Author(s)
Junwei Hanhanjunwei1981@163.com,Siyao Liu liusiyao29@163.com
MiRSEA documentation built on May 29, 2024, 4:36 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| envData | R Documentation |
The variables in the environment include predefine pathway, target information of miRNAs,an expression profile and a example result of miRNA list
Description
The pathway information is download on the GSEA website,concluding three pathway database (KEGG,Biocarta,Reactome).We arranged the data for miRNAs and their target genes,which is according to four database including miRTarBase,TarBaseV6.0,miRecords and mir2Disease. example.GCT is an interesting miRNA expression data and example.cls is the vector of binary labels(class.labels) p is a p value weighted matrix (rows are pathway ,cols are miRNAs).p2miR is a correlation profile between kegg pathways and each human miRNA. miRList is a list of drawing parameters of KEGG ERBB signaling Pathway.
Format
An environment variable
Details
The environment variable includes the variable pathway, mfile,example.cls,example.gct,p,p2miR,miRList
Author(s)
Junwei Hanhanjunwei1981@163.com,Siyao Liu liusiyao29@163.com
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.