MigConnectivity | R Documentation |

The MigConnectivity package allows the user to estimate or calculate
transition probabilities for migratory animals between any two phases of the
annual cycle, using a variety of different data types, with the function
`estTransition`

. The user can also estimate or calculate the
strength of migratory connectivity (MC), a standardized metric to quantify
the extent to which populations co-occur between two phases of the annual
cycle. MC is independent of data type and accounts for the relative abundance
of populations distributed across a seasonal range. The package includes
functions to estimate MC (`estStrength`

) and the more traditional
metric of migratory connectivity strength (Mantel correlation; rM;
`estMantel`

) incorporating uncertainty from multiple
sources of sampling error. Description of the MC metric can be found in Cohen
et al. (2018).

`estTransition`

: Estimate psi (transition probabilities between
locations in two phases of the annual cycle)

`estStrength`

: Estimate MC, migratory connectivity strength

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