SharedGenesPathsFeat: Shared genes, pathways and features across methods

In MosaiClusteR: An Umbrella Framework for Multi-Source and Multi-Omics Clustering

Shared genes, pathways and features across methods

Description

The SharedGenesPathsFeat function takes the intersection of the differentially expressed genes, the pathways and the characteristic features over the methods per cluster.

Usage

SharedGenesPathsFeat(
  DataLimma = NULL,
  DataMLP = NULL,
  DataFeat = NULL,
  names = NULL,
  Selection = FALSE
)

Arguments

DataLimma	Optional. The output of a DiffGenes function. Default is NULL.
DataMLP	Optional. The output of Geneset.intersect function. Default is NULL.
DataFeat	Optional. The output of CharacteristicFeatures function. Default is NULL.
names	Optional. Names of the methods. Default is NULL.
Selection	Logical. Whether a selection of objects was considered. Default is FALSE.

Value

A list with a Table summarizing the shared elements and a Which element detailing the shared genes, pathways and features per cluster.

Examples

## Not run: 
SharedGenesPathsFeat(DataLimma=MCF7_FT_DE,DataMLP=MCF7_Paths_intersection,names=c("FP","TP"))

## End(Not run)

MosaiClusteR documentation built on Oct. 25, 2026, 1:08 a.m.