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MultiSV: MultiSV: an R package for identification of structural variations in multiple populations based on whole genome resequencing
MultiSV is an R package for identification of structural variations in multiple populations based on whole genome resequencing. It fits linear mixed model and identifies structural variations in multiple populations using whole genome sequencing data. It could also be manipulated to use on RNA-seq data for differential gene expression (implementation in future releases). Main steps for analysis include generating read depth in bins using ComputeBinCounts. conversion of bins to MultiSV format using Bin2MultiSV. Finally, identification of structural variations using CallMultiSV.
Getting started
Browse package contents
Package details |
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| Author | Khurram Maqbool |
| Maintainer | Khurram Maqbool <khurram.maqbool@outlook.com> |
| License | LGPL (>= 3) |
| Version | 0.0-67 |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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