CallMultiSV: A Method to identify MultiSV from RDbin files for different...

In MultiSV: MultiSV: an R package for identification of structural variations in multiple populations based on whole genome resequencing

Description

This is the main function to identify SVs. It works after the data has been prepared using Bin2MultiSV from bam files. Bin2MultiSV will prepare the data for MultiSV package and CallMultiSV will identify SVs.

Usage

CallMultiSV(CfgFile, LgLim, SVSize, MtlSVOut)

Arguments

CfgFile	: A tab separated file with the following format (with no header) Contrast SampleID PathtoRDbinFile Treat Sample1 ~/Sample1.WindowRD-1000.count Control Ref1 ~/Ref1.WindowRD-1000.count Contrast SampleID PathtoRDbinFile
LgLim	: log2 limit, set 0.6 or higher
SVSize	: Minimum size of SV to identify, set 5000 or higher
MtlSVOut	: Output file

Details

Data Input from read depth (RD) bins

Value

CallMultiSV:

Author(s)

Khurram Maqbool

See Also

Bin2MultiSV

Examples

## Not run: 
CallMultiSV(CfgFile, LgLim, SVSize, MtlSVOut)

## End(Not run)

MultiSV documentation built on May 2, 2019, 9:25 a.m.