ComputeBinCounts: Compute read counts in bins from read hits.

In MultiSV: MultiSV: an R package for identification of structural variations in multiple populations based on whole genome resequencing

Description

Compute read counts in bins from read hits.

Usage

ComputeBinCounts(RDBinSampleFile,
	RDBinChrSizeFile,RDBinSampleName,
	RDBinWindowSize,OutFolder)

Arguments

RDBinSampleFile	: File containing read hits
RDBinChrSizeFile	: File containing list of chromosmes with their sizes
RDBinSampleName	: Name of the Indvidual or population
RDBinWindowSize	: Size of bin
OutFolder	: output directory to save the counts file

Value

ComputeBinCounts: Compute read counts in bins

Author(s)

Khurram Maqbool

See Also

Bin2MultiSV

Examples

## Not run: 
ComputeBinCounts(RDBinSampleFile, RDBinChrSizeFile, RDBinSampleName ,
								RDBinWindowSize, OutFolder)

## End(Not run)

MultiSV documentation built on May 2, 2019, 9:25 a.m.