NFP: Network Fingerprint Framework in R

An implementation of the network fingerprint framework that introduced in paper "Network fingerprint: a knowledge-based characterization of biomedical networks" (Cui, 2015) <doi:10.1038/srep13286>. This method worked by making systematic comparisons to a set of well-studied "basic networks", measuring both the functional and topological similarity. A biological could be characterized as a spectrum-like vector consisting of similarities to basic networks. It shows great potential in biological network study.

AuthorYang Cao [aut, cre], Fei Li [aut]
Date of publication2016-11-21 12:01:34
MaintainerYang Cao <yiluheihei@gmail.com>
LicenseGPL (>= 2)
Version0.99.2
https://github.com/yiluheihei/NFP

View on CRAN

Functions

calc_sim_score Man page
cluster_info Man page
cluster_info-methods Man page
cluster_info,NFP-method Man page
group Man page
group-methods Man page
group,NFPRefnet-method Man page
install_data_package Man page
kegg_refnet Man page
load_KEGG_refnet Man page
net Man page
net-methods Man page
net,NFPRefnet-method Man page
NFP Man page
NFP-class Man page
NFP-package Man page
NFPRefnet-class Man page
perm_score Man page
perm_score-methods Man page
perm_score,NFP-method Man page
plot_NFP Man page
plot_NFPlist Man page
plot_NFP-methods Man page
plot_NFP,NFP-method Man page
refnet_name Man page
refnet_name-methods Man page
refnet_name,NFPRefnet-method Man page
show Man page
show-methods Man page
show,NFP-method Man page
show_NFPRefnet Man page
show,NFPRefnet-method Man page
show_NFPRefnet-methods Man page
subnet Man page
subnet-methods Man page
subnet,NFPRefnet-method Man page
sub_NFP Man page
sub_NFP-methods Man page
sub_NFP,NFP-method Man page

Files

NFP
NFP/inst
NFP/inst/extdata
NFP/inst/extdata/signalPathway.txt
NFP/inst/extdata/humanPathway.txt
NFP/inst/doc
NFP/inst/doc/NFP.pdf
NFP/inst/doc/NFP.Rnw
NFP/inst/doc/NFP.R
NFP/tests
NFP/tests/testthat.R
NFP/tests/testthat
NFP/tests/testthat/test-NFP.R
NFP/tests/testthat/test-NFPRefnet.R
NFP/NAMESPACE
NFP/data
NFP/data/datalist
NFP/data/kegg_refnet.rda
NFP/R
NFP/R/NFP-class.R NFP/R/Untitled.R NFP/R/load_KEGG_refnet.R NFP/R/kegg_refnet.R NFP/R/plot_NFPlist.R NFP/R/NFP.R NFP/R/calc_sim_score.R NFP/R/install_data_package.R NFP/R/zzz.R NFP/R/NFPRefnet-class.R
NFP/vignettes
NFP/vignettes/NFP.Rnw
NFP/vignettes/nfp_plot.png
NFP/README.md
NFP/MD5
NFP/build
NFP/build/vignette.rds
NFP/DESCRIPTION
NFP/man
NFP/man/NFPRefnet-class.Rd NFP/man/cluster_info-methods.Rd NFP/man/calc_sim_score.Rd NFP/man/NFP-class.Rd NFP/man/net-methods.Rd NFP/man/show_NFPRefnet-methods.Rd NFP/man/plot_NFPlist.Rd NFP/man/load_KEGG_refnet.Rd NFP/man/kegg_refnet.Rd NFP/man/subnet-methods.Rd NFP/man/perm_score-methods.Rd NFP/man/group-methods.Rd NFP/man/sub_NFP-methods.Rd NFP/man/NFP.Rd NFP/man/install_data_package.Rd NFP/man/plot_NFP-methods.Rd NFP/man/refnet_name-methods.Rd NFP/man/show-methods.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.