calc_sim_score: Calculating the similarity scores

In NFP: Network Fingerprint Framework in R

Description

This function was used to calculate the similarity scores between a network and the reference network.

Usage

calc_sim_score(net, NFPnet, nperm = 100, ...)

Arguments

net,	a graphNel object to represent the query biological networks, for more details see graphNEL
NFPnet,	a NFPRefnet object, one or more kegg pathway map, or customized networks. For more details see NFPRefnet-class.
nperm,	number of random networks for similarity score standardization
...,	arguments passed to apcluster

Value

a similarity scoring vector,length is the same as the number of networks

See Also

NFPRefnet-class.

NFP documentation built on April 12, 2021, 5:09 p.m.