Fast and Accurate Trisomy Prediction in Non-Invasive Prenatal Testing

Global functions | |
---|---|

BuildFullModel | Source code |

CalculateVariation | Source code |

CorrectGcWithWeights | Source code |

GetCorrectionFactor | Source code |

GetMeanNumberOfReadsGcStep | Source code |

GetNextPredictor | Source code |

PredictTrisomy | Source code |

RetrieveSubsets | Source code |

SelectModelsFixedRegressionApproach | Source code |

SelectModelsFixedRegressionApproach.CombinedStrands | Source code |

SelectModelsFixedRegressionApproach.SeparatedStrands | Source code |

ZScoresControl | Source code |

add_samples_controlgroup | Man page Source code |

appendchromosomes | Source code |

as_control_group | Man page Source code |

bin_bam_sample | Man page Source code |

bin_reads | Source code |

calculate_ncv_score | Man page Source code |

calculate_regression_scores | Source code |

calculate_z_score | Man page Source code |

chi_correct | Man page Source code |

chrfractions | Man page Source code |

chrfractions.CombinedStrands | Source code |

chrfractions.SeparatedStrands | Source code |

chrreads | Source code |

collapse_all_stats | Source code |

collapse_prac_cv_control_scores | Source code |

collapse_prediction_sets | Source code |

collapse_result | Source code |

collapse_results | Source code |

construct_sample | Source code |

correct.reads | Source code |

correct_reads_sex_chromosome | Source code |

correct_sample_bin | Source code |

correct_sample_loess | Source code |

correctbins | Source code |

correctsamples | Source code |

correctsamples_include_xy | Source code |

diagnose_control_group | Man page Source code |

gc_correct | Man page Source code |

gc_correct_NIPTControlGroup_bin | Source code |

gc_correct_NIPTControlGroup_loess | Source code |

gc_correct_NIPTSample_bin | Source code |

gc_correct_NIPTSample_loess | Source code |

get_abberant_scores | Source code |

get_mean_sd_shapiro | Source code |

get_ncv_reads | Source code |

get_ncv_statistics | Source code |

getbins | Source code |

getcontrolchromosomes | Man page Source code |

getcontrolchromosomes.CombinedStrands | Source code |

getcontrolchromosomes.SeparatedStrands | Source code |

getcorrectionstatus | Source code |

getfractionscontrolgroup | Man page Source code |

getfractionscontrolgroup.CombinedStrands | Source code |

getfractionscontrolgroup.SeparatedStrands | Source code |

getreadscontrolgroup | Man page Source code |

getreadscontrolgroup.CombinedStrands | Source code |

getreadscontrolgroup.SeparatedStrands | Source code |

getsamplenames | Source code |

getstats | Source code |

getstrandtype | Source code |

listmodels | Source code |

match_control_group | Man page Source code |

mean_correction | Source code |

ncv_template | Source code |

nipt_sample | Man page |

perform_regression | Man page Source code |

prepare_ncv | Man page Source code |

regression_template | Source code |

remove_duplicates_controlgroup | Man page Source code |

remove_sample_controlgroup | Man page Source code |

retrieve_fractions_of_interest | Man page Source code |

retrieve_fractions_of_interest.CombinedStrands | Source code |

retrieve_fractions_of_interest.SeparatedStrands | Source code |

rownames_additional_stats | Source code |

setrownamesmatrix | Source code |

splitchromosomes | Source code |

sumchiscores | Source code |

sumfandrautosomal | Source code |

sumfandrsex | Source code |

testtrainset | Source code |

unlist | Source code |

z_score_template | Source code |

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