Fast and Accurate Trisomy Prediction in Non-Invasive Prenatal Testing

add_samples_controlgroup | Add a sample to an existing control group |

as_control_group | Convert list of nipt samples to nipt control group |

bin_bam_sample | Load and bin BAM file |

calculate_ncv_score | Use an NCV template to calculate a NCV score for sample of... |

calculate_z_score | Calculate 'standard' Z-score |

chi_correct | Performs chi-square based variation reduction |

chrfractions | Calculate chromosomal fraction |

diagnose_control_group | Diagnose control group |

gc_correct | Perform a GC bias correction on nipt sample |

getcontrolchromosomes | Get control chromosomes names |

getfractionscontrolgroup | Get all chromosomal fractions of a control group |

getreadscontrolgroup | Get reads per chromosome per control group sample |

match_control_group | Best matching control group by least sum of squares |

perform_regression | Regression based Z score |

prepare_ncv | Prepare NCV calculation |

remove_duplicates_controlgroup | Remove duplicate samples from control group |

remove_sample_controlgroup | Remove a sample by samplename from control group |

retrieve_fractions_of_interest | Retrieve the chromosomal fractions of a chromosome of... |

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