parallel_execute: Generic execute command for parallelised runs

In NMproject: Script Based 'NONMEM' Model Development

Generic execute command for parallelised runs

Description

Character to be used with the cmd() function to launch a parallelised run.

Usage

parallel_execute

Format

An object of class character of length 1.

Details

Requires cores and parafile fields to be set.

Value

A character object.

See Also

nm_getsetters().

Examples

# create example object m1 from package demo files
exdir <- system.file("extdata", "examples", "theopp", package = "NMproject")
m1 <- new_nm(run_id = "m1", 
             based_on = file.path(exdir, "Models", "ADVAN2.mod"),
             data_path = file.path(exdir, "SourceData", "THEOPP.csv")) %>%
  cmd(parallel_execute) %>%
  parafile("/opt/NONMEM/nm75/run/mpilinux8.pnm") %>%
  cores(8)
  
cmd(m1)

m2 <- m1 %>% child("m2") ## inherits same command as above

parallel_execute ## view the character to see how psn interfaces with SGE

NMproject documentation built on Sept. 30, 2022, 1:06 a.m.