plotConceptSetCounts: Plot the concept counts of a summariseConceptSetCounts...

In OmopSketch: Characterise Tables of an OMOP Common Data Model Instance

Plot the concept counts of a summariseConceptSetCounts output.

Description

Plot the concept counts of a summariseConceptSetCounts output.

Usage

plotConceptSetCounts(result, facet = NULL, colour = NULL)

Arguments

result	A summarised_result object (output of summariseConceptSetCounts).
facet	Columns to face by. Formula format can be provided. See possible columns to face by with: visOmopResults::tidyColumns().
colour	Columns to colour by. See possible columns to colour by with: visOmopResults::tidyColumns().

Value

A ggplot2 object showing the concept counts.

Examples

library(dplyr)

cdm <- mockOmopSketch()

result <- cdm |>
  summariseConceptSetCounts(
    conceptSet = list(
      "Renal agenesis" = 194152,
      "Manic mood" = c(4226696, 4304866, 37110496, 40371897)
    )
  )

result |>
  filter(variable_name == "Number subjects") |>
  plotConceptSetCounts(facet = "codelist_name", colour = "standard_concept_name")

PatientProfiles::mockDisconnect(cdm)

OmopSketch documentation built on June 8, 2025, 1:36 p.m.