summariseConceptSetCounts: Summarise concept counts in patient-level data. Only concepts...

In OmopSketch: Characterise Tables of an OMOP Common Data Model Instance

Summarise concept counts in patient-level data. Only concepts recorded during observation period are counted.

Description

Summarise concept counts in patient-level data. Only concepts recorded during observation period are counted.

Usage

summariseConceptSetCounts(
  cdm,
  conceptSet,
  countBy = c("record", "person"),
  concept = TRUE,
  interval = "overall",
  sex = FALSE,
  ageGroup = NULL,
  dateRange = NULL
)

Arguments

cdm	A cdm object
conceptSet	List of concept IDs to summarise.
countBy	Either "record" for record-level counts or "person" for person-level counts
concept	TRUE or FALSE. If TRUE code use will be summarised by concept.
interval	Time interval to stratify by. It can either be "years", "quarters", "months" or "overall".
sex	TRUE or FALSE. If TRUE code use will be summarised by sex.
ageGroup	A list of ageGroup vectors of length two. Code use will be thus summarised by age groups.
dateRange	A vector of two dates defining the desired study period. Only the start_date column of the OMOP table is checked to ensure it falls within this range. If dateRange is NULL, no restriction is applied.

Value

A summarised_result object with results overall and, if specified, by strata.

Examples

library(OmopSketch)

cdm <- mockOmopSketch()

cs <- list(sumatriptan = c(35604883, 35604879, 35604880, 35604884))

results <- summariseConceptSetCounts(cdm, conceptSet = cs)

results

PatientProfiles::mockDisconnect(cdm)

OmopSketch documentation built on June 8, 2025, 1:36 p.m.