tableConceptIdCounts: Create a visual table from a summariseConceptIdCounts()...

In OmopSketch: Characterise Tables of an OMOP Common Data Model Instance

Create a visual table from a summariseConceptIdCounts() result.

Description

Create a visual table from a summariseConceptIdCounts() result.

Usage

tableConceptIdCounts(result, display = "overall", type = "reactable")

Arguments

result	A summarised_result object.
display	A character string indicating which subset of the data to display. Options are: "overall": Show all source and standard concepts. "standard": Show only standard concepts. "source": Show only source codes. "missing standard": Show only source codes that are missing a mapped standard concept.
type	Type of formatting output table, either "reactable" or "datatable".

Value

A gt or flextable object with the summarised data.

Examples

library(OmopSketch)
library(CDMConnector)
library(duckdb)

requireEunomia()
con <- dbConnect(duckdb(), eunomiaDir())
cdm <- cdmFromCon(con = con, cdmSchema = "main", writeSchema = "main")

result <- summariseConceptIdCounts(cdm, "condition_occurrence")
result |> tableConceptIdCounts()

OmopSketch documentation built on June 8, 2025, 1:36 p.m.