tableClinicalRecords: Create a visual table from a summariseClinicalRecord()...

In OmopSketch: Characterise Tables of an OMOP Common Data Model Instance

Create a visual table from a summariseClinicalRecord() output.

Description

Create a visual table from a summariseClinicalRecord() output.

Usage

tableClinicalRecords(result, type = "gt")

Arguments

result	Output from summariseClinicalRecords().
type	Type of formatting output table, either "gt" or "flextable".

Value

A gt or flextable object with the summarised data.

Examples

cdm <- mockOmopSketch()

summarisedResult <- summariseClinicalRecords(
  cdm = cdm,
  omopTableName = c("condition_occurrence", "drug_exposure"),
  recordsPerPerson = c("mean", "sd"),
  inObservation = TRUE,
  standardConcept = TRUE,
  sourceVocabulary = TRUE,
  domainId = TRUE,
  typeConcept = TRUE
)

summarisedResult |>
  suppress(minCellCount = 5) |>
  tableClinicalRecords()

PatientProfiles::mockDisconnect(cdm)

OmopSketch documentation built on June 8, 2025, 1:36 p.m.