API for OncoBayes2
Bayesian Logistic Regression for Oncology Dose-Escalation Trials
| Global functions | |
|---|---|
| .abbreviate_label | Source code |
| .args2mix | Source code |
| .as_draws_conversion | Source code |
| .as_one_logical | Source code |
| .assert_is_blrm_trial | Source code |
| .assert_is_blrm_trial_and_prior_is_set | Source code |
| .assert_list_mixmvnorm | Source code |
| .assert_mixmvnorm | Source code |
| .blrm_trial_compute_ewoc | Source code |
| .blrm_trial_compute_ewoc_check | Source code |
| .blrm_trial_compute_prior | Source code |
| .blrm_trial_compute_simple_prior | Source code |
| .blrm_trial_ewoc_check | Source code |
| .blrm_trial_merge_data | Source code |
| .blrm_trial_predict | Source code |
| .blrm_trial_sanitize_data | Source code |
| .comp_args2mix | Source code |
| .comp_mix2stan | Source code |
| .contains_draws | Source code |
| .create_group_to_stratum_mapping | Source code |
| .deparse0 | Source code |
| .get_X | Man page Source code |
| .get_cmdstan_model | Source code |
| .get_strata_group_fct | Man page Source code |
| .is.stanfit | Source code |
| .is_list_mixmvnorm | Source code |
| .is_mixmvnorm | Source code |
| .label_array | Source code |
| .label_index | Man page Source code |
| .make_label_factor | Source code |
| .model_distribution | Source code |
| .mvnormdim | Source code |
| .mvnormsigma | Source code |
| .onAttach | Source code |
| .onLoad | Source code |
| .parse_mu_eta_mix | Source code |
| .parse_mu_log_beta_mix | Source code |
| .parse_tau_beta_mix | Source code |
| .parse_tau_eta_mix | Source code |
| .priormix2stan | Source code |
| .sanitize_dose_info | Source code |
| .standata_empty_mixture | Source code |
| .stop2 | Source code |
| .validate_factor | Source code |
| .validate_group_stratum_nesting | Man page Source code |
| OncoBayes2 | Man page |
| OncoBayes2-package | Man page |
| as_draws | Man page |
| as_draws.blrm_trial | Man page Source code |
| as_draws.blrmfit | Man page Source code |
| as_draws_array | Man page |
| as_draws_array.blrm_trial | Man page Source code |
| as_draws_array.blrmfit | Man page Source code |
| as_draws_df | Man page |
| as_draws_df.blrm_trial | Man page Source code |
| as_draws_df.blrmfit | Man page Source code |
| as_draws_list | Man page |
| as_draws_list.blrm_trial | Man page Source code |
| as_draws_list.blrmfit | Man page Source code |
| as_draws_matrix | Man page |
| as_draws_matrix.blrm_trial | Man page Source code |
| as_draws_matrix.blrmfit | Man page Source code |
| as_draws_rvars | Man page |
| as_draws_rvars.blrm_trial | Man page Source code |
| as_draws_rvars.blrmfit | Man page Source code |
| bind_rows_0 | Man page Source code |
| blrm_exnex | Man page Source code |
| blrm_formula_linear | Man page Source code |
| blrm_formula_saturating | Man page Source code |
| blrm_logit_grouped_rv | Source code |
| blrm_trial | Man page Source code |
| check_plot_variables | Source code |
| codata_combo2 | Man page |
| critical_quantile | Man page Source code |
| critical_quantile.blrm_trial | Man page Source code |
| critical_quantile.blrmfit | Man page Source code |
| critical_quantile.default | Source code |
| diagnostic-quantities | Man page |
| dose_info_combo2 | Man page |
| draws-OncoBayes2 | Man page |
| drug_info_combo2 | Man page |
| example-combo2 | Man page |
| example-combo2_trial | Man page |
| example-combo3 | Man page |
| example-single-agent | Man page |
| example_model | Man page Source code |
| expand_newdata | Source code |
| hist_SA | Man page |
| hist_combo2 | Man page |
| hist_combo3 | Man page |
| inv_logit | Man page |
| label_percent | Source code |
| lodds | Man page |
| log1m_exp_max0 | Source code |
| log1m_exp_max0_fast | Source code |
| log_inv_logit | Man page Source code |
| log_inv_logit_fast | Source code |
| log_mean_exp | Man page Source code |
| log_posterior | Man page |
| log_posterior.blrmfit | Man page Source code |
| logit | Man page |
| model.matrix.blrmfit | Source code |
| neff_ratio | Man page |
| neff_ratio.blrmfit | Man page Source code |
| nsamples | Man page |
| nsamples.blrm_trial | Source code |
| nsamples.blrmfit | Man page Source code |
| nuts_params | Man page |
| nuts_params.blrmfit | Man page Source code |
| plot_blrm | Man page |
| plot_toxicity_curve | Man page Source code |
| plot_toxicity_curve.blrm_trial | Man page Source code |
| plot_toxicity_curve.blrmfit | Man page Source code |
| plot_toxicity_curve.default | Source code |
| plot_toxicity_intervals | Man page Source code |
| plot_toxicity_intervals.blrm_trial | Man page Source code |
| plot_toxicity_intervals.blrmfit | Man page Source code |
| plot_toxicity_intervals.default | Source code |
| plot_toxicity_intervals_stacked | Man page Source code |
| plot_toxicity_intervals_stacked.blrm_trial | Man page Source code |
| plot_toxicity_intervals_stacked.blrmfit | Man page Source code |
| plot_toxicity_intervals_stacked.default | Source code |
| posterior_interval | Man page |
| posterior_interval.blrm_trial | Source code |
| posterior_interval.blrmfit | Man page Source code |
| posterior_linpred | Man page |
| posterior_linpred.blrm_trial | Source code |
| posterior_linpred.blrmfit | Man page Source code |
| posterior_predict | Man page |
| posterior_predict.blrm_trial | Source code |
| posterior_predict.blrmfit | Man page Source code |
| pp_binomial_trials | Source code |
| pp_data | Man page Source code |
| predictive_interval | Man page |
| predictive_interval.blrm_trial | Source code |
| predictive_interval.blrmfit | Man page Source code |
| print.blrm_trial | Man page Source code |
| print.blrmfit | Man page Source code |
| print.prior_summary.blrm_trial | Source code |
| print.prior_summary.blrmfit | Source code |
| prior_summary | Man page |
| prior_summary.blrm_trial | Source code |
| prior_summary.blrmfit | Man page Source code |
| rhat | Man page |
| rhat.blrmfit | Man page Source code |
| summary.blrm_trial | Man page Source code |
| summary.blrmfit | Man page Source code |
| tidyselect_parameters | Source code |
| update.blrm_trial | Man page Source code |
| update.blrmfit | Man page Source code |
