Strain: R6Class Strain

In OpenABMCovid19: Agent-Based Model for Modelling the COVID-19

Description

Strain object has information about each new strain

Active bindings

c_strain

the C strain R pointer object (SWIG wrapped)

Methods

Public methods

• Strain$new()

• Strain$idx()

• Strain$transmission_multiplier()

• Strain$hospitalised_fraction()

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Method new()

Usage

Strain$new(model, strain_id)

Arguments

model

R6 Model object

strain_id

The strain ID.

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Method idx()

Wrapper for C API strain$idx().

Usage

Strain$idx()

Returns

the index of the strain

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Method transmission_multiplier()

Wrapper for C API strain$transmission_multiplier().

Usage

Strain$transmission_multiplier()

Returns

the transmission_multiplier of the strain

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Method hospitalised_fraction()

Wrapper for C API strain$hospitalised_fraction().

Usage

Strain$hospitalised_fraction()

Returns

the hospitalised fraction for the strain

Examples

# Add new strain with increased transmissibility
model = Model.new( params = list( n_total=10000, max_n_strains=3 ) )
strain = model$add_new_strain( transmission_multiplier = 1.3 )

OpenABMCovid19 documentation built on July 20, 2021, 5:08 p.m.