Nothing
## ----setup, include = FALSE---------------------------------------------------
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>"
)
## ----include=FALSE------------------------------------------------------------
dataset_available <- tryCatch({
# downloading the SaoLourencoBasin multi-layer raster and make it available into R
url <- "https://zenodo.org/record/3685230/files/SaoLourencoBasin.rda?download=1"
temp <- tempfile()
download.file(url, temp, mode = "wb") # downloading the SaoLourencoBasin dataset
load(temp)
}, error = function(e) {
return(FALSE)
})
## ----include=FALSE, eval=isFALSE(dataset_available)---------------------------
# knitr::knit_exit("## The complete rendering of this document depends on the availability of the dataset in zenodo. Please try at another time.")
## -----------------------------------------------------------------------------
# first we load the OpenLand package
library(OpenLand)
# The SaoLourencoBasin dataset
SaoLourencoBasin
## ----eval=FALSE, fig.height=5, fig.width=7, include=FALSE---------------------
# #sp::spplot(SaoLourencoBasin)
## -----------------------------------------------------------------------------
# SL_2002_2014 <- contingenceTable(input_raster = SaoLourencoBasin, pixelresolution = 30)
SL_2002_2014
## ----echo=TRUE----------------------------------------------------------------
## editing the category name
SL_2002_2014$tb_legend$categoryName <- factor(c("Ap", "FF", "SA", "SG", "aa", "SF",
"Agua", "Iu", "Ac", "R", "Im"),
levels = c("FF", "SF", "SA", "SG", "aa", "Ap",
"Ac", "Im", "Iu", "Agua", "R"))
## add the color by the same order of the legend,
## it can be the color name (eg. "black") or the HEX value (eg. #000000)
SL_2002_2014$tb_legend$color <- c("#FFE4B5", "#228B22", "#00FF00", "#CAFF70",
"#EE6363", "#00CD00", "#436EEE", "#FFAEB9",
"#FFA54F", "#68228B", "#636363")
## now we have
SL_2002_2014$tb_legend
## ----eval=FALSE, include=FALSE------------------------------------------------
# knitr::kable(
# caseStudy$lulc_Mulstistep[1:10, ]
# )
## -----------------------------------------------------------------------------
testSL <- intensityAnalysis(dataset = SL_2002_2014,
category_n = "Ap", category_m = "SG")
# it returns a list with 6 objects
names(testSL)
## -----------------------------------------------------------------------------
# showing the objects from the intensity analysis for our illustrative case
testSL
## ----fig.width=7, fig.height=4------------------------------------------------
plot(testSL$interval_lvl,
labels = c(leftlabel = "Interval Change Area (%)",
rightlabel = "Annual Change Area (%)"),
marginplot = c(-8, 0), labs = c("Changes", "Uniform Rate"),
leg_curv = c(x = 2/10, y = 3/10))
## ----fig.width=7, fig.height=4------------------------------------------------
plot(testSL$category_lvlGain,
labels = c(leftlabel = bquote("Gain Area (" ~ km^2 ~ ")"),
rightlabel = "Intensity Gain (%)"),
marginplot = c(.3, .3), labs = c("Categories", "Uniform Rate"),
leg_curv = c(x = 5/10, y = 5/10))
## ----fig.width=7, fig.height=4------------------------------------------------
plot(testSL$category_lvlLoss,
labels = c(leftlabel = bquote("Loss Area (" ~ km^2 ~ ")"),
rightlabel = "Loss Intensity (%)"),
marginplot = c(.3, .3), labs = c("Categories", "Uniform Rate"),
leg_curv = c(x = 5/10, y = 5/10))
## ----fig.width=7, fig.height=4------------------------------------------------
plot(testSL$transition_lvlGain_n,
labels = c(leftlabel = bquote("Gain of Ap (" ~ km^2 ~ ")"),
rightlabel = "Intensity Gain of Ap (%)"),
marginplot = c(.3, .3), labs = c("Categories", "Uniform Rate"),
leg_curv = c(x = 5/10, y = 5/10))
## ----fig.width=7, fig.height=4------------------------------------------------
plot(testSL$transition_lvlLoss_m,
labels = c(leftlabel = bquote("Loss of SG (" ~ km^2 ~ ")"),
rightlabel = "Intensity Loss of SG (%)"),
marginplot = c(.3, .3), labs = c("Categories", "Uniform Rate"),
leg_curv = c(x = 1/10, y = 5/10))
## ----fig.width=7, fig.height=4------------------------------------------------
netgrossplot(dataset = SL_2002_2014$lulc_Multistep,
legendtable = SL_2002_2014$tb_legend,
xlab = "LUC Category",
ylab = bquote("Area (" ~ km^2 ~ ")"),
changesLabel = c(GC = "Gross changes", NG = "Net Gain", NL = "Net Loss"),
color = c(GC = "gray70", NG = "#006400", NL = "#EE2C2C")
)
## ----fig.width=7, fig.height=6------------------------------------------------
chordDiagramLand(dataset = SL_2002_2014$lulc_Onestep,
legendtable = SL_2002_2014$tb_legend)
## ----fig.width=8, fig.height=4------------------------------------------------
sankeyLand(dataset = SL_2002_2014$lulc_Multistep,
legendtable = SL_2002_2014$tb_legend)
## ----fig.width=8, fig.height=4------------------------------------------------
sankeyLand(dataset = SL_2002_2014$lulc_Onestep,
legendtable = SL_2002_2014$tb_legend)
## ----fig.width=7, fig.height=4------------------------------------------------
barplotLand(dataset = SL_2002_2014$lulc_Multistep,
legendtable = SL_2002_2014$tb_legend,
xlab = "Year",
ylab = bquote("Area (" ~ km^2~ ")"),
area_km2 = TRUE)
## -----------------------------------------------------------------------------
# testacc <- acc_changes(SaoLourencoBasin)
#
# testacc
## ----fig.height=7, fig.width=7------------------------------------------------
# tmap_options(max.raster = c(plot = 41711112, view = 41711112))
# acc_map <- tmap::tm_shape(testacc[[1]]) +
# tmap::tm_raster(
# style = "cat",
# labels = c(
# paste0(testacc[[2]]$PxValue[1], " Change", " (", round(testacc[[2]]$Percent[1], 2), "%", ")"),
# paste0(testacc[[2]]$PxValue[2], " Change", " (", round(testacc[[2]]$Percent[2], 2), "%", ")"),
# paste0(testacc[[2]]$PxValue[3], " Changes", " (", round(testacc[[2]]$Percent[3], 2), "%", ")")
# ),
# palette = c("#757575", "#FFD700", "#CD0000"),
# title = "Changes in the interval \n2002 - 2014"
# ) +
# tmap::tm_legend(
# position = c(0.01, 0.2),
# legend.title.size = 1.2,
# legend.title.fontface = "bold",
# legend.text.size = 0.8
# ) +
# tmap::tm_compass(type = "arrow",
# position = c("right", "top"),
# size = 3) +
# tmap::tm_scale_bar(
# breaks = c(seq(0, 40, 10)),
# position = c(0.76, 0.001),
# text.size = 0.6
# ) +
# tmap::tm_credits(
# paste0(
# "Case of Study site",
# "\nAccumulate changes from 2002 to 2014",
# "\nData create with OpenLand package",
# "\nLULC derived from Embrapa Pantanal, Instituto SOS Pantanal, and WWF-Brasil 2015."
# ),
# size = 0.7,
# position = c(0.01, -0, 01)
# ) +
# tmap::tm_graticules(
# n.x = 6,
# n.y = 6,
# lines = FALSE,
# #alpha = 0.1
# labels.rot = c(0, 90)
# ) +
# tmap::tm_layout(inner.margins = c(0.02, 0.02, 0.02, 0.02))
#
#
#
#
# tmap::tmap_save(acc_map,
# filename = "vignettes/acc_mymap.png",
# width = 7,
# height = 7)
## ----mymap, echo=FALSE, fig.cap='Accumulated changes in pixels in the interval 2002 - 2014 at four time points (2002, 2008, 2010, 2012, 2014)', out.width='100%'----
knitr::include_graphics("acc_mymap.png")
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