Man pages for OpenSpecy
Analyze, Process, Identify, and Share Raman and (FT)IR Spectra
| adj_intens | Adjust spectral intensities to standard absorbance units. |
| adj_range | Range restriction and flattening for spectra |
| adj_wave | Adjust wavelength to wavenumbers for Raman |
| area_under_band | Measure the area under band of spectra |
| as_OpenSpecy | Create 'OpenSpecy' objects |
| assess_spec | Assess common spectral quality issues |
| automate_particle_analysis | Automate particle analysis for spectral maps |
| build_lib | Build spectral libraries |
| calculate_emissivity | Calculate spectral emissivity at supplied material... |
| conform_spec | Conform spectra to a standard wavenumber series |
| correct_spike | Detect and correct isolated spikes in spectra |
| data_norm | Normalization and conversion of spectral data |
| def_features | Define features |
| estimate_temperature | Estimate material temperature and an emissivity diagnostic |
| gen_OpenSpecy | Generic Open Specy Methods |
| human_ts | Create human readable timestamps |
| interactive_plots | Interactive plots for OpenSpecy objects |
| io_spec | Read and write spectral data |
| lib_metadata_name_lookup | Create and apply metadata-name lookup rules |
| make_rel | Make spectral intensities relative |
| manage_lib | Manage spectral libraries |
| manage_na | Ignore or remove NA intensities |
| manage_spec | Manage spectral objects |
| match_spec | Identify and filter spectra |
| material_percentage_uncertainty | Calculate material percentage uncertainty from observed... |
| open_specs | Open a large spectral source as file-backed Specs |
| OpenSpecy-package | OpenSpecy: Analyze, Process, Identify, and Share Raman and... |
| particle_image | Plot particle maps with base graphics |
| peak_ratio | Calculate ratios between spectral intensities at two... |
| plot.OpenSpecyParticleAnalysis | Plot a recorded particle-analysis diagnostic |
| point_intensity | Measure spectral intensity at one wavenumber |
| predict_class_reference | Predict blank class-reference values with reviewed regex... |
| process_spec | Process Spectra |
| raman_hdpe | Sample Raman spectrum |
| read_envi | Read ENVI data |
| read_ext | Read spectral data |
| read_multi | Read spectral data from multiple files |
| read_opus | Read spectral data from Bruker OPUS binary files |
| read_opus_raw | Read a Bruker OPUS spectrum binary raw string |
| run_app | Run Open Specy app |
| sig_noise | Calculate signal and noise metrics for OpenSpecy objects |
| smooth_intens | Smooth spectral intensities |
| spatial_smooth | Spatial Smoothing of OpenSpecy Objects |
| spec_res | Spectral resolution |
| Specs | Create compressed Specs objects |
| split_h5 | Split a large HDF5 spectral map by metadata category |
| split_spec | Split Open Specy objects |
| subtr_baseline | Automated background subtraction for spectral data |
| test_lib | Test reference library |
| validation_metrics | Particle analysis validation metrics |
| visual_image | Attach visual images to spectral map objects |
