Bayesian hierarchical methods for pathway analysis of genomewide association data: Normal/Bayes factors and Sparse Normal/Adaptive lasso. The Frequentist Fisher's product method is included as well.
|Date of publication||2015-12-08 14:53:45|
|Maintainer||Marina Evangelou <email@example.com>|
|License||GPL (>= 2)|
create.pathway.df: Creates a pathway data frame
FM.chi.pvalue: Calculates the Fisher's method p-value for each tested...
genes: A data frame of 20 artificial genes with their chromosomes...
genotypes: Genotypes for 100 SNPs and 75 individuals
NBF: Normal/Bayes factors method for finding associated pathways
PAGWAS-package: Pathway Analysis Methods for Genomewide Association Data
pathways: A list of 2 pathways with their gene members
SNAL: Sparse Normal/Adaptive lasso method for finding associated...
SNAL.calculation: Sparse Normal/Adaptive lasso method for finding associated...
SNPs: A data frame of 100 artificial SNPs with their chromosomes...
snps.to.genes: Assigns SNPs to genes
snps.to.pathways: Assigns SNPs to pathways