Description Usage Arguments Value References See Also Examples
View source: R/plot_parse_fit.R
Heatmaps of the data with estimated informative variables and the indicator for pairwise informativeness of each globally informative variables.
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output |
results from parse, apfp, apL1 or nopenalty functions. For the ‘nopenalty’ function, the ‘short.output’ should be FALSE. |
y |
data. |
plot_type |
takes two values, 'info.data' or 'info.pair'. 'info.data' is the heatmap of the data with informative variables; 'info.pair' indicates which globally informative variable is pairwise informative for each pair of clusters. |
eps.diff |
The lower bound of pairwise difference of two mean values. Any value lower than it is treated as 0. The default value is 1e-5. |
margins |
parameter in 'heatmap.2' function, 2-dimensional numeric vector containing the margins for column and row names, respectively. |
cexRow |
parameter in 'heatmap.2' function, positive numbers for the row axis labeling. |
cexCol |
parameter in 'heatmap.2' function, positive numbers for the column axis labeling. |
lhei |
parameters in 'heatmap.2' function, visual layout of column height. |
lwid |
parameters in 'heatmap.2' function, visual layout of column weight. |
adjCol |
parameters in 'heatmap.2' function, justification of column labels (variables names). |
sepwidth |
parameters in 'heatmap.2' function, 2-dimensional vector giving the width and height of the separator box |
heatmap of the data with informative variables or heatmap of whether the globally informative variables are pairwise informative for each pair of clusters or not.
Gregory R. Warnes, Ben Bolker, Lodewijk Bonebakker, Robert Gentleman, Wolfgang Huber Andy Liaw, Thomas Lumley, Martin Maechler, Arni Magnusson, Steffen Moeller, Marc Schwartz and Bill Venables (2015). gplots: Various R Programming Tools for Plotting Data. R package version 2.17.0. https://CRAN.R-project.org/package=gplots
heatmap.2
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