PGRdup: Discover Probable Duplicates in Plant Genetic Resources Collections

Provides functions to aid the identification of probable/possible duplicates in Plant Genetic Resources (PGR) collections using 'passport databases' comprising of information records of each constituent sample. These include methods for cleaning the data, creation of a searchable Key Word in Context (KWIC) index of keywords associated with sample records and the identification of nearly identical records with similar information by fuzzy, phonetic and semantic matching of keywords.

AuthorJ. Aravind [aut, cre], J. Radhamani [aut], Kalyani Srinivasan [aut], B. Ananda Subhash [aut], R. K. Tyagi [aut]
Date of publication2016-03-09 17:36:34
MaintainerJ. Aravind <j.aravind@icar.gov.in>
LicenseGPL-2 | GPL-3
Version0.2.2.1

View on CRAN

Files in this package

PGRdup
PGRdup/inst
PGRdup/inst/CITATION
PGRdup/inst/extdata
PGRdup/inst/extdata/PGRdup.svg
PGRdup/inst/doc
PGRdup/inst/doc/Introduction.Rmd
PGRdup/inst/doc/Introduction.pdf
PGRdup/src
PGRdup/src/double_metaphone.h
PGRdup/src/fdouble_metaphone.c
PGRdup/NAMESPACE
PGRdup/NEWS
PGRdup/data
PGRdup/data/GN1000.rda
PGRdup/R
PGRdup/R/KWCounts.R PGRdup/R/AddProbDup.R PGRdup/R/PGRdup-package.R PGRdup/R/globals.R PGRdup/R/ParseProbDup.R PGRdup/R/SplitProbDup.R PGRdup/R/MergeProbDup.R PGRdup/R/print.ProbDup.R PGRdup/R/DoubleMetaphone.R PGRdup/R/DataClean.R PGRdup/R/ReconstructProbDup.R PGRdup/R/read.genesys.R PGRdup/R/MergeKW.R PGRdup/R/ViewProbDup.R PGRdup/R/ProbDup.R PGRdup/R/KWIC.R PGRdup/R/ValidatePrimKey.R PGRdup/R/DisProbDup.R PGRdup/R/print.KWIC.R PGRdup/R/ReviewProbDup.R PGRdup/R/GN1000.R
PGRdup/vignettes
PGRdup/vignettes/Introduction.Rmd
PGRdup/vignettes/imgs
PGRdup/vignettes/imgs/PGRdup.png
PGRdup/vignettes/bibliography.bibtex
PGRdup/README.md
PGRdup/MD5
PGRdup/build
PGRdup/build/vignette.rds
PGRdup/DESCRIPTION
PGRdup/man
PGRdup/man/DataClean.Rd PGRdup/man/print.KWIC.Rd PGRdup/man/PGRdup-package.Rd PGRdup/man/ReviewProbDup.Rd PGRdup/man/ParseProbDup.Rd PGRdup/man/MergeKW.Rd PGRdup/man/MergeProbDup.Rd PGRdup/man/ViewProbDup.Rd PGRdup/man/ProbDup.Rd PGRdup/man/DisProbDup.Rd PGRdup/man/KWIC.Rd PGRdup/man/KWCounts.Rd PGRdup/man/ValidatePrimKey.Rd PGRdup/man/print.ProbDup.Rd PGRdup/man/GN1000.Rd PGRdup/man/SplitProbDup.Rd PGRdup/man/ReconstructProbDup.Rd PGRdup/man/read.genesys.Rd PGRdup/man/DoubleMetaphone.Rd PGRdup/man/AddProbDup.Rd

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