coef.PLNmixturefit: Extract model coefficients

In PLNmodels: Poisson Lognormal Models

Extract model coefficients

Description

Extracts model coefficients from objects returned by PLN() and its variants

Usage

## S3 method for class 'PLNmixturefit'
coef(object, type = c("main", "means", "covariance", "mixture"), ...)

Arguments

object	an R6 object with class PLNmixturefit
type	type of parameter that should be extracted. Either "main" (default) for \Theta , "means" for \mu , "mixture" for \pi or "covariance" for \Sigma
...	additional parameters for S3 compatibility. Not used

Value

A matrix of coefficients extracted from the PLNfit model.

See Also

sigma.PLNmixturefit()

Examples

data(trichoptera)
trichoptera <- prepare_data(trichoptera$Abundance, trichoptera$Covariate)
myPLN <- PLNmixture(Abundance ~ 1 + offset(log(Offset)),
           data = trichoptera, control = PLNmixture_param(smoothing = "none"))  %>% getBestModel()
coef(myPLN) ## Theta - empty here
coef(myPLN, type = "mixture") ## pi
coef(myPLN, type = "means") ## mu
coef(myPLN, type = "covariance") ## Sigma

PLNmodels documentation built on Aug. 24, 2023, 5:11 p.m.