coefficient_path: Extract the regularization path of a PLNnetwork fit
In PLNmodels: Poisson Lognormal Models

View source: R/PLNnetworkfamily-S3methods.R

coefficient_path

R Documentation

Extract the regularization path of a PLNnetwork fit

Description

Extract the regularization path of a PLNnetwork fit

Usage

coefficient_path(Robject, precision = TRUE, corr = TRUE)

Arguments

`Robject`	an object with class `PLNnetworkfamily`, i.e. an output from `PLNnetwork()`
`precision`	a logical, should the coefficients of the precision matrix Omega or the covariance matrix Sigma be sent back. Default is `TRUE`.
`corr`	a logical, should the correlation (partial in case `precision = TRUE`) be sent back. Default is `TRUE`.

Value

Sends back a tibble/data.frame.

Examples

data(trichoptera)
trichoptera <- prepare_data(trichoptera$Abundance, trichoptera$Covariate)
fits <- PLNnetwork(Abundance ~ 1, data = trichoptera)
head(coefficient_path(fits))

PLNmodels documentation built on Aug. 24, 2023, 5:11 p.m.