plot.PLNmixturefamily: Display the criteria associated with a collection of...

In PLNmodels: Poisson Lognormal Models

Display the criteria associated with a collection of PLNmixture fits (a PLNmixturefamily)

Description

Display the criteria associated with a collection of PLNmixture fits (a PLNmixturefamily)

Usage

## S3 method for class 'PLNmixturefamily'
plot(
  x,
  type = c("criteria", "diagnostic"),
  criteria = c("loglik", "BIC", "ICL"),
  reverse = FALSE,
  ...
)

Arguments

x	an R6 object with class PLNmixturefamily
type	a character, either "criteria" or "diagnostic" for the type of plot.
criteria	vector of characters. The criteria to plot in c("loglik", "BIC", "ICL"). Default is c("loglik", "BIC", "ICL").
reverse	A logical indicating whether to plot the value of the criteria in the "natural" direction (loglik - 0.5 penalty) or in the "reverse" direction (-2 loglik + penalty). Default to FALSE, i.e use the natural direction, on the same scale as the log-likelihood.
...	additional parameters for S3 compatibility. Not used

Details

The BIC and ICL criteria have the form 'loglik - 1/2 * penalty' so that they are on the same scale as the model log-likelihood. You can change this direction and use the alternate form '-2*loglik + penalty', as some authors do, by setting reverse = TRUE.

Value

Produces either a diagnostic plot (with type = 'diagnostic') or the evolution of the criteria of the different models considered (with type = 'criteria', the default).

Examples

data(trichoptera)
trichoptera <- prepare_data(trichoptera$Abundance, trichoptera$Covariate)
myMixtures <- PLNmixture(Abundance ~ 1 + offset(log(Offset)),
           data = trichoptera, control = PLNmixture_param(smoothing = "none"))
plot(myMixtures, reverse = TRUE)

PLNmodels documentation built on Aug. 24, 2023, 5:11 p.m.