PMA: Penalized Multivariate Analysis

Performs Penalized Multivariate Analysis: a penalized matrix decomposition, sparse principal components analysis, and sparse canonical correlation analysis, described in the following papers: (1) Witten, Tibshirani and Hastie (2009) A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis. Biostatistics 10(3):515-534. (2) Witten and Tibshirani (2009) Extensions of sparse canonical correlation analysis, with applications to genomic data. Statistical Applications in Genetics and Molecular Biology 8(1): Article 28.

Install the latest version of this package by entering the following in R:
install.packages("PMA")
AuthorDaniela Witten and Rob Tibshirani and Sam Gross and Balasubramanian Narasimhan
Date of publication2013-03-25 08:26:26
MaintainerDaniela Witten <dwitten@u.washington.edu>
LicenseGPL (>= 2)
Version1.0.9

View on CRAN

Functions

breastdata Man page
CCA Man page
CCA.permute Man page
cor.xl.LoadData Man page
cor.xl.Plot1 Man page
cor.xl.Plot2 Man page
cor.xl.Plot2a Man page
cor.xl.Plot2b Man page
cor.xl.Plot3 Man page
cor.xl.Plot3a Man page
cor.xl.Plot3b Man page
cor.xl.RunAnalysis Man page
MultiCCA Man page
MultiCCA.permute Man page
plot.CCA.permute Man page
PlotCGH Man page
plot.MultiCCA.permute Man page
plot.PMDL1FL.cv Man page
plot.PMDL1L1.cv Man page
plot.SPC.cv Man page
PMA Man page
PMA-package Man page
PMD Man page
PMD.cv Man page
print.CCA Man page
print.CCA.permute Man page
print.MultiCCA Man page
print.MultiCCA.permute Man page
print.PMDL1FL Man page
print.PMDL1FL.cv Man page
print.PMDL1L1 Man page
print.PMDL1L1.cv Man page
print.SPC Man page
print.SPC.cv Man page
SPC Man page
SPC.cv Man page

Files

MD5
R
R/CCA.xlfuns.R R/zzz.R R/SamrFunctions.R R/PMD.R R/PlotFusedLasso.R R/CCA.R R/FLSAGeneralInclude.R R/MultiCCA.R R/PMD.CGH.R
src
src/Groups.h
src/init.cc
src/FLSAGeneralMain.cc
src/Scheduler.cc
src/FLSA.h
src/GeneralFunctions.cc
src/PenaltyGraph.h
src/Groups.cc
src/PenaltyGraph.cc
src/FLSAGeneral.cc
src/MaxFlowGraph.cc
src/GraphDefinitions.h
src/FLSA.cc
src/FLSAGeneral.h
src/Scheduler.h
src/GeneralFunctions.h
src/MaxFlowGraph.h
data
data/breastdata.rda
data/datalist
NAMESPACE
DESCRIPTION
man
man/SPC.Rd
man/notusing
man/notusing/CCA.Rd man/notusing/CCA.permute.Rd man/MultiCCA.Rd man/SPC.cv.Rd man/PMA-package.Rd man/CCA.Rd man/PMD.Rd man/breastdata.Rd man/PlotCGH.Rd man/PMA-internal.Rd man/MultiCCA.permute.Rd man/CCA.permute.Rd man/PMD.cv.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.