PMA: Penalized Multivariate Analysis

Performs Penalized Multivariate Analysis: a penalized matrix decomposition, sparse principal components analysis, and sparse canonical correlation analysis, described in the following papers: (1) Witten, Tibshirani and Hastie (2009) A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis. Biostatistics 10(3):515-534. (2) Witten and Tibshirani (2009) Extensions of sparse canonical correlation analysis, with applications to genomic data. Statistical Applications in Genetics and Molecular Biology 8(1): Article 28.

AuthorDaniela Witten and Rob Tibshirani and Sam Gross and Balasubramanian Narasimhan
Date of publication2013-03-25 08:26:26
MaintainerDaniela Witten <dwitten@u.washington.edu>
LicenseGPL (>= 2)
Version1.0.9

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Files in this package

PMA
PMA/MD5
PMA/R
PMA/R/CCA.xlfuns.R PMA/R/zzz.R PMA/R/SamrFunctions.R PMA/R/PMD.R PMA/R/PlotFusedLasso.R PMA/R/CCA.R PMA/R/FLSAGeneralInclude.R PMA/R/MultiCCA.R PMA/R/PMD.CGH.R
PMA/src
PMA/src/Groups.h
PMA/src/init.cc
PMA/src/FLSAGeneralMain.cc
PMA/src/Scheduler.cc
PMA/src/FLSA.h
PMA/src/GeneralFunctions.cc
PMA/src/PenaltyGraph.h
PMA/src/Groups.cc
PMA/src/PenaltyGraph.cc
PMA/src/FLSAGeneral.cc
PMA/src/MaxFlowGraph.cc
PMA/src/GraphDefinitions.h
PMA/src/FLSA.cc
PMA/src/FLSAGeneral.h
PMA/src/Scheduler.h
PMA/src/GeneralFunctions.h
PMA/src/MaxFlowGraph.h
PMA/data
PMA/data/breastdata.rda
PMA/data/datalist
PMA/NAMESPACE
PMA/DESCRIPTION
PMA/man
PMA/man/SPC.Rd
PMA/man/notusing
PMA/man/notusing/CCA.Rd PMA/man/notusing/CCA.permute.Rd PMA/man/MultiCCA.Rd PMA/man/SPC.cv.Rd PMA/man/PMA-package.Rd PMA/man/CCA.Rd PMA/man/PMD.Rd PMA/man/breastdata.Rd PMA/man/PlotCGH.Rd PMA/man/PMA-internal.Rd PMA/man/MultiCCA.permute.Rd PMA/man/CCA.permute.Rd PMA/man/PMD.cv.Rd

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