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PRECAST: Embedding and Clustering with Alignment for Spatial Datasets
An efficient data integration method is provided for multiple spatial transcriptomics data with non-cluster-relevant effects such as the complex batch effects. It unifies spatial factor analysis simultaneously with spatial clustering and embedding alignment, requiring only partially shared cell/domain clusters across datasets. More details can be referred to Wei Liu, et al. (2023) <doi:10.1038/s41467-023-35947-w>.
Package details |
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| Author | Wei Liu [aut, cre], Yi Yang [aut], Jin Liu [aut] |
| Maintainer | Wei Liu <liuweideng@gmail.com> |
| License | GPL-3 |
| Version | 1.6.6 |
| URL | https://github.com/feiyoung/PRECAST |
| Package repository | View on CRAN |
| Installation |
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