AddTSNE: Add tSNE embeddings for a Seurat object
In PRECAST: Embedding and Clustering with Alignment for Spatial Datasets

AddTSNE

R Documentation

Add tSNE embeddings for a Seurat object

Run t-SNE dimensionality reduction on selected features.

  AddTSNE(seuInt, n_comp=3, reduction='PRECAST', assay='PRE_CAST', seed=1)

`seuInt`	a Seurat object.
`n_comp`	an optional positive integer, specify the number of features to be extracted.
`reduction`	an optional string, means which dimensional reduction (e.g. PRECAST, PCA) to use for the tSNE. Default is PRECAST.
`assay`	Name of assay that that t-SNE is being run on.
`seed`	an optional integer, the random seed to evaluate tSNE.

Nothing

Return a revised Seurat object by adding tSNE reduction object.

nothing

Wei Liu