getAdj_reg: Calculate adjacency matrix for regular spatial coordinates.
In PRECAST: Embedding and Clustering with Alignment for Spatial Datasets
getAdj_reg R Documentation
Calculate adjacency matrix for regular spatial coordinates.
Description
Calculate adjacency matrix for regular spatial coordinates from ST or Visium platform.
Usage
getAdj_reg(pos, platform= "Visium")
Arguments
pos
is a n-by-d matrix of position, where n is the number of spots, and d is the dimension of coordinates.
platform
a string, specify the platform of the provided data, default as "Visium", and only support "ST" and "Visium" platform.
Value
A sparse matrix containing the neighbourhood.
See Also
getAdj_auto, getAdj, getAdj_fixedNumber.
PRECAST documentation built on May 29, 2024, 3 a.m.
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| getAdj_reg | R Documentation |
Calculate adjacency matrix for regular spatial coordinates.
Description
Calculate adjacency matrix for regular spatial coordinates from ST or Visium platform.
Usage
getAdj_reg(pos, platform= "Visium")
Arguments
pos |
is a n-by-d matrix of position, where n is the number of spots, and d is the dimension of coordinates. |
platform |
a string, specify the platform of the provided data, default as "Visium", and only support "ST" and "Visium" platform. |
Value
A sparse matrix containing the neighbourhood.
See Also
getAdj_auto, getAdj, getAdj_fixedNumber.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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