PRECASTObj: Each PRECASTObj object has a number of slots which store...
In PRECAST: Embedding and Clustering with Alignment for Spatial Datasets
PRECASTObj-class R Documentation
Each PRECASTObj object has a number of slots which store information.
Description
Each PRECASTObj object has a number of slots which store information. Key slots to access
are listed below.
Slots
seuListA list with Seurat object as component, representing the raw expression count matrix, spatial coordinates and meta data for each data batch, where the spatial coordinates information is saved in the metadata of Seurat, named "row" and "col" for eahc data batch.
seulistA Seurat list after the preprocessing step in preparation for PRECAST model.
AdjListThe adjacency matrix list for a PRECASTObj object.
parameterListThe model parameter settings for a PRECASTObj object
resListThe results after fitting PRECAST models.
projectName of the project.
PRECAST documentation built on April 3, 2025, 7:36 p.m.
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| PRECASTObj-class | R Documentation |
Each PRECASTObj object has a number of slots which store information.
Description
Each PRECASTObj object has a number of slots which store information. Key slots to access are listed below.
Slots
seuListA list with Seurat object as component, representing the raw expression count matrix, spatial coordinates and meta data for each data batch, where the spatial coordinates information is saved in the metadata of Seurat, named "row" and "col" for eahc data batch.
seulistA Seurat list after the preprocessing step in preparation for PRECAST model.
AdjListThe adjacency matrix list for a PRECASTObj object.
parameterListThe model parameter settings for a PRECASTObj object
resListThe results after fitting PRECAST models.
projectName of the project.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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