AddUMAP: Add UMAP embeddings for a Seurat object
In PRECAST: Embedding and Clustering with Alignment for Spatial Datasets

AddUMAP

R Documentation

Add UMAP embeddings for a Seurat object

Run UMAP dimensionality reduction on selected features.

  AddUMAP(seuInt, n_comp=3, reduction='PRECAST', assay='PRE_CAST', seed=1)

`seuInt`	a Seurat object.
`n_comp`	an optional positive integer, specify the number of features to be extracted.
`reduction`	an optional string, means which dimensional reduction (e.g. PRECAST, PCA) to use for the UMAP. Default is PRECAST.
`assay`	Name of assay that that t-SNE is being run on.
`seed`	an optional integer, the random seed to evaluate UMAP.

Nothing

Return a revised Seurat object by adding UMAP reduction object.

nothing

Wei Liu