PRIMsrc: PRIM Survival Regression Classification
Version 0.6.3

Performs a unified treatment of Bump Hunting by Patient Rule Induction Method (PRIM) in Survival, Regression and Classification settings (SRC). The current version is a development release that only implements the case of a survival response. New features will be added soon as they are available.

Browse man pages Browse package API and functions Browse package files

AuthorJean-Eudes Dazard [aut, cre], Michael Choe [ctb], Michael LeBlanc [ctb], Alberto Santana [ctb]
Date of publication2015-11-20 08:41:01
MaintainerJean-Eudes Dazard <jxd101@case.edu>
LicenseGPL (>= 3) | file LICENSE
Version0.6.3
URL https://github.com/jedazard/PRIMsrc
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("PRIMsrc")

Man pages

plot: 2D Visualization of Data Scatter and Box Vertices
plot_boxkm: Visualization of Survival Distributions
plot_boxtrace: Visualization of Covariates Traces
plot_boxtraj: Visualization of Peeling Trajectories/Profiles
plot_profile: Visualization for Model Selection/Validation
predict: Predict Function
PrimSRC.news: Display the 'PRIMsrc' Package News
PrimSRC-package: Bump Hunting by Patient Rule Induction Method in Survival,...
print: Print Function
Real.1-data: Real Dataset #1: Clinical Dataset (p < n case)
Real.2-data: Real Dataset #2: Genomic Dataset (p >> n case)
sbh: Cross-Validated Survival Bump Hunting
summary: Summary Function
Synthetic.1b-data: Synthetic Dataset #1b: p < n case
Synthetic.1-data: Synthetic Dataset #1: p < n case
Synthetic.2-data: Synthetic Dataset #2: p < n case
Synthetic.3-data: Synthetic Dataset #3: p < n case
Synthetic.4-data: Synthetic Dataset #4: p > n case

Functions

PRIMsrc Man page
PRIMsrc.news Man page Source code
Real.1 Man page
Real.2 Man page
Synthetic.1 Man page
Synthetic.1b Man page
Synthetic.2 Man page
Synthetic.3 Man page
Synthetic.4 Man page
cbindlist Source code
cv.ave.box Source code
cv.ave.fold Source code
cv.ave.peel Source code
cv.box.rep Source code
cv.comb.box Source code
cv.comb.fold Source code
cv.comb.peel Source code
cv.folds Source code
cv.null Source code
cv.presel Source code
cv.pval Source code
disp Source code
endpoints Source code
is.empty Source code
lapply.array Source code
lapply.mat Source code
list2array Source code
list2mat Source code
onAttach Source code
peel.box Source code
plot Man page
plot.PRSP Man page Source code
plot_boxkm Man page Source code
plot_boxtrace Man page Source code
plot_boxtraj Man page Source code
plot_profile Man page Source code
predict Man page
predict.PRSP Man page Source code
print Man page
print.PRSP Man page Source code
rep.mat Source code
sbh Man page Source code
summary Man page
summary.PRSP Man page Source code
updatecut Source code

Files

inst
inst/CITATION
inst/NEWS
inst/doc
inst/doc/PRIMsrc_0.6.3.pdf
NAMESPACE
data
data/Synthetic.1.rda
data/Real.2.rda
data/Synthetic.1b.rda
data/Synthetic.2.rda
data/Real.1.rda
data/datalist
data/Synthetic.3.rda
data/Synthetic.4.rda
R
R/PRIMsrc.internal.r
R/PRIMsrc.r
MD5
DESCRIPTION
man
man/plot_profile.Rd
man/plot_boxkm.Rd
man/Synthetic.2-data.Rd
man/Synthetic.1b-data.Rd
man/Synthetic.1-data.Rd
man/Real.2-data.Rd
man/predict.Rd
man/Synthetic.3-data.Rd
man/Synthetic.4-data.Rd
man/PrimSRC.news.Rd
man/plot_boxtraj.Rd
man/sbh.Rd
man/Real.1-data.Rd
man/plot_boxtrace.Rd
man/print.Rd
man/plot.Rd
man/PrimSRC-package.Rd
man/summary.Rd
LICENSE
PRIMsrc documentation built on May 20, 2017, 5:30 a.m.