Pasha: Preprocessing of Aligned Sequences from HTS Analyses
Version 0.99.21

Pipeline and additional tools designed to handle aligned data from chromatin NGS experiments (less adapted for typical RNAseq applications). Specifically, starting from aligned reads after sequencing, the pipeline function aims at removing artefacts from datasets, estimate in-silico the fragments size, and generate WIG files with corrected values. The package also provides several tools for WIG files manipulations, scaling, merging and subtract (e.g. input).

Getting started

Package details

AuthorRomain Fenouil, Nicolas Descostes, Lionel Spinelli, Frederic Koch, Muhammad Ahmad Maqbool, Touati Benoukraf, Pierre Cauchy, Charlene Innocenti, Pierre Ferrier, Jean-Christophe Andrau
Date of publication2016-03-18 16:23:47
MaintainerRomain Fenouil <romain.fenouil@mssm.edu>
LicenseGPL-3
Version0.99.21
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("Pasha")

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Pasha documentation built on Jan. 15, 2017, 6:21 p.m.