Files in Pasha
Preprocessing of Aligned Sequences from HTS Analyses
Pasha
Pasha/inst
Pasha/inst/resources
Pasha/inst/resources/mm9.ref
Pasha/inst/resources/ce10.ref
Pasha/inst/resources/dm3.ref
Pasha/inst/resources/hg18.ref
Pasha/inst/resources/hg19.ref
Pasha/inst/resources/sacCer3.ref
Pasha/inst/extdata
Pasha/inst/extdata/embedDataTest.sam
Pasha/inst/extdata/resultsFromFunctionalTestsWIG.tar.gz
Pasha/inst/extdata/resultsFromMultireadFunctionalTests.tar.gz
Pasha/inst/extdata/embededDataTest_MultiSignal.txt
Pasha/inst/extdata/mm9_RepeatMasker_2000l.txt
Pasha/inst/extdata/embedDataTest.bam
Pasha/inst/extdata/resultTests.pdf
Pasha/inst/extdata/embededDataTest_MultiSignal.bow
Pasha/inst/extdata/embedDataTest.bam.bai
Pasha/inst/doc
Pasha/inst/doc/Pasha.Rnw
Pasha/inst/doc/Pasha.R
Pasha/inst/doc/Pasha.pdf
Pasha/tests
Pasha/tests/test_Pasha.Rout.save
Pasha/tests/test_Pasha.R
Pasha/src
Pasha/src/WigRepeatAnalyzerMain.cpp
Pasha/src/AlignedTag.h
Pasha/src/regex.h
Pasha/src/RepeatLocus.cpp
Pasha/src/WigRepeatAnalyzer.cpp
Pasha/src/MultireadCSEMDispatcherMain.cpp
Pasha/src/MultireadDispatcher.h
Pasha/src/WigLocus.h
Pasha/src/MultireadArtifactRemover.cpp
Pasha/src/RepeatLocus.h
Pasha/src/R_init_Pasha.c
Pasha/src/pileupDouble.c
Pasha/src/MultireadCSEMBcTree.h
Pasha/src/binVector.c
Pasha/src/MultireadDispatcherMain.cpp
Pasha/src/WigLocus.cpp
Pasha/src/MultireadCSEMPosPair.h
Pasha/src/MultireadArtifactRemoverMain.cpp
Pasha/src/MultireadDispatcher.cpp
Pasha/src/WigRepeatAnalyzer.h
Pasha/src/AlignedTag.cpp
Pasha/src/elongationEstimation.c
Pasha/src/MultireadArtifactRemover.h
Pasha/NAMESPACE
Pasha/NEWS
Pasha/R
Pasha/R/multiread_RemoveArtifact.R
Pasha/R/binVector.R
Pasha/R/plotReadsRepartitionAnnotations.R
Pasha/R/test_functional.R
Pasha/R/elongationEstimation.R
Pasha/R/test_functional_multiread.R
Pasha/R/multiread_UniformDispatch.R
Pasha/R/WigRepeatAnalyzer.R
Pasha/R/pipelineChipSeq.R
Pasha/R/multiread_CSEMDispatch.R
Pasha/R/Class_AlignedData.R
Pasha/R/pileupDouble.R
Pasha/R/readAlignedBAM_minimalSEQ.R
Pasha/R/normAndSubtract.R
Pasha/R/mergeWigs.R
Pasha/R/wigIO.R
Pasha/vignettes
Pasha/vignettes/Pasha.Rnw
Pasha/MD5
Pasha/build
Pasha/build/vignette.rds
Pasha/DESCRIPTION
Pasha/man
Pasha/man/binVector.Rd
Pasha/man/testMultireadFunctional.Rd
Pasha/man/normAndSubtract.Rd
Pasha/man/mergeWigs.Rd
Pasha/man/multiread_RemoveArtifact.Rd
Pasha/man/multiread_UniformDispatch.Rd
Pasha/man/elongationEstimation.Rd
Pasha/man/estimateElongationSize.Rd
Pasha/man/getArtefactsIndexes.Rd
Pasha/man/pileupDouble.Rd
Pasha/man/PASHA-package.Rd
Pasha/man/wigIO.Rd
Pasha/man/processPipeline.Rd
Pasha/man/WigRepeatAnalyzer.Rd
Pasha/man/plotReadsRepartitionAnnotations.Rd
Pasha/man/generatePiled.Rd
Pasha/man/AlignedData-class.Rd
Pasha/man/testFunctional.Rd
Pasha/man/multiread_CSEMDispatch.Rd
