as.omics_array: Coerce a matrix into a omics_array object.

In Patterns: Deciphering Biological Networks with Patterned Heterogeneous Measurements

Coerce a matrix into a omics_array object.

Description

Coerce a matrix into a omics_array object.

Usage

as.omics_array(
  M,
  time,
  subject,
  name_probe = NULL,
  gene_ID = NULL,
  group = 0,
  start_time = 0
)

Arguments

M	A matrix. Contains the omicsarray measurements. Should be of size N * K, with N the number of genes and K=T*P with T the number of time points, and P the number of subjects. This matrix should be created using cbind(M1,M2,...) with M1 a N*T matrix with the measurements for patient 1, M2 a N*T matrix with the measurements for patient 2.
time	A vector. The time points measurements
subject	The number of subjects.
name_probe	Vector with the row names of the omics array.
gene_ID	Vector with the actors' IDs of the row names of the omics array.
group	Vector with the actors' groups of the row names of the omics array.
start_time	Vector with the actors' starting time (i.e. the time it is thought to begin to have an effect on another actor in the network).

Value

A omics_array object.

Author(s)

Bertrand Frederic, Myriam Maumy-Bertrand.

Examples

if(require(CascadeData)){
	data(micro_US, package="CascadeData")
	micro_US<-as.omics_array(micro_US[1:100,],time=c(60,90,210,390),subject=6)
	plot(micro_US)
	}

Patterns documentation built on Dec. 1, 2022, 5:09 p.m.