probeMerge-omics_array-method: Function to merge probesets

In Patterns: Deciphering Biological Networks with Patterned Heterogeneous Measurements

Function to merge probesets

Description

Used to collapse probesets using the collapseRows function of the WGCNA package

Usage

## S4 method for signature 'omics_array'
probeMerge(x, ...)

Arguments

x	omicsarray
...	Additionnal parameters to the collapseRows function of the WGCNA package

Value

Formal class 'omics_array' [package "Patterns"] with 7 slots

Author(s)

Bertrand Frederic, Myriam Maumy-Bertrand.

Examples

if(require(CascadeData)){
data(micro_S)
D<-as.omics_array(micro_S[1:2000,],1:4,6)
D@gene_ID<-jetset::scores.hgu133plus2[D@name,"EntrezID"]
PM <- probeMerge(D)
}

Patterns documentation built on Dec. 1, 2022, 5:09 p.m.