PhylogeneticEM: Automatic Shift Detection using a Phylogenetic EM

Implementation of the automatic shift detection method for Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on phylogenies. Some tools to handle equivalent shifts configurations are also available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Package details

AuthorPaul Bastide [aut, cre], Mahendra Mariadassou [ctb]
MaintainerPaul Bastide <[email protected]>
LicenseGPL (>= 2) | file LICENSE
Version1.3.0
URL https://github.com/pbastide/PhylogeneticEM
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("PhylogeneticEM")

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PhylogeneticEM documentation built on Oct. 3, 2019, 9:03 a.m.