compute_tree_correlations_matrix.scOU | R Documentation |
compute_tree_correlations_matrix.scOU
computes the (n+m)x(m+n) matrix of correlations
induced by the tree. It takes two cases in consideration: root fixed, or root in stationary
state.
compute_tree_correlations_matrix.scOU(
times_shared,
distances_phylo,
params_old,
...
)
times_shared |
times of shared ancestry of all nodes and tips, result of function
|
distances_phylo |
(matrix) : phylogenetic distance, result of function
|
params_old |
(list) : old parameters to be used in the E step |
matrix of variance covariance for the scOU
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