check_data: Test the format of data entry.
In PhylogeneticEM: Automatic Shift Detection using a Phylogenetic EM
check_data R Documentation
Test the format of data entry.
Description
check_data tests if the data matrix has the right format, and if it is
correctly ordered to match the tips names.
Usage
check_data(phylo, Y_data, check.tips.names)
Arguments
phylo
a phylogenetic tree, class phylo.
Y_data
matrix of data at the tips (pxntaxa)
check.tips.names
(bool) whether to check the tips names or not
trait_correlation_threshold
threshold for trait correlation. Default to 0.9.
Value
Y_data a re-ordered matrix of data (if necessary)
PhylogeneticEM documentation built on Aug. 31, 2022, 9:16 a.m.
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| check_data | R Documentation |
Test the format of data entry.
Description
check_data tests if the data matrix has the right format, and if it is
correctly ordered to match the tips names.
Usage
check_data(phylo, Y_data, check.tips.names)
Arguments
phylo |
a phylogenetic tree, class |
Y_data |
matrix of data at the tips (pxntaxa) |
check.tips.names |
(bool) whether to check the tips names or not |
trait_correlation_threshold |
threshold for trait correlation. Default to 0.9. |
Value
Y_data a re-ordered matrix of data (if necessary)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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