compute_residuals.simple: Residuals
In PhylogeneticEM: Automatic Shift Detection using a Phylogenetic EM
compute_residuals.simple R Documentation
Residuals
Description
compute_residuals.simple computes the residuals after the fit of the
data in the simple case where the inverse of the variance matrix is given.
Usage
compute_residuals.simple(phylo, Y_data_vec, sim, Sigma_YY_chol_inv, miss)
Arguments
phylo
Input tree.
sim
(list) : result of function simulate.
Y_data
: vector indicating the data at the tips.
Sigma_YY_inv
: invert of the variance-covariance matrix of the data.
Details
This function takes parameters sim and Sigma_YY_inv from
compute_mean_variance.simple. It uses function extract_simulate_internal
to extract the needed quantities from these objects.
PhylogeneticEM documentation built on Aug. 31, 2022, 9:16 a.m.
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| compute_residuals.simple | R Documentation |
Residuals
Description
compute_residuals.simple computes the residuals after the fit of the
data in the simple case where the inverse of the variance matrix is given.
Usage
compute_residuals.simple(phylo, Y_data_vec, sim, Sigma_YY_chol_inv, miss)
Arguments
phylo |
Input tree. |
sim |
(list) : result of function |
Y_data |
: vector indicating the data at the tips. |
Sigma_YY_inv |
: invert of the variance-covariance matrix of the data. |
Details
This function takes parameters sim and Sigma_YY_inv from
compute_mean_variance.simple. It uses function extract_simulate_internal
to extract the needed quantities from these objects.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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