amr_positives: Identify Antimicrobial Resistance Positive Plasmids from...
In Plasmidprofiler: Visualization of Plasmid Profile Results
Description
Usage
Arguments
Value
Examples
Description
This function loads the imported blast results, identifies which plasmids
carry AMR genes at highest identity. May have issues with multiple genes per
plasmid, currently optimized for identifying one of two genes
Usage
1
amr_positives(blast.results)
Arguments
blast.results
Blast results loaded from read_blast or from Global Env
Value
Two column DF of plasmid names and genes present
Examples
1
2
3
4
## Not run:
amr_positives(blastdata)
## End(Not run)
Plasmidprofiler documentation built on May 1, 2019, 9:19 p.m.
R Package Documentation
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Description Usage Arguments Value Examples
Description
This function loads the imported blast results, identifies which plasmids carry AMR genes at highest identity. May have issues with multiple genes per plasmid, currently optimized for identifying one of two genes
Usage
1 | amr_positives(blast.results)
|
Arguments
blast.results |
Blast results loaded from read_blast or from Global Env |
Value
Two column DF of plasmid names and genes present
Examples
1 2 3 4 | ## Not run:
amr_positives(blastdata)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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