tree_maker: Create Dendrogram Based on Plasmid Content

In Plasmidprofiler: Visualization of Plasmid Profile Results

Description

Reads report, converts to matrix of Sample ~ Plasmid with Sureness as cell values. Performs a hierarchical cluster analysis on a set of dissimilarities derived from the matrix. Creates a dendrogram from this data. Returns either the HC data or the dendrogram plot

Usage

tree_maker(report, hc.only = NA)

Arguments

report	Dataframe of results produced by subsampler or combine_results
hc.only	Flag to return only hierarchical clustering results instead of dendrogram plot (set to 1)

Value

Dendrogram object or hierarchical clustering results

See Also

subsampler, combine_results

Examples

## Not run: 
tree_maker(report)

## End(Not run)

Example output

Welcome

Plasmidprofiler documentation built on May 1, 2019, 9:19 p.m.