blast_parser: Blast Results Parser Function
In Plasmidprofiler: Visualization of Plasmid Profile Results
Description
Usage
Arguments
Value
Examples
Description
Loads the imported blast results, extracts desired columns, Create new column of ratio between hit
length to query length - higher as denominator, adjusts pID by this ratio. Any AMR results are removed from the returned df.
Usage
1
blast_parser(blast.results)
Arguments
blast.results
Blast results loaded from read_blast or Global Env
Value
Blast table with pID adjusted by ratio of hit length to query length (larger as denominator)
Examples
1
2
3
4
## Not run:
blast_parser(blastdata)
## End(Not run)
Plasmidprofiler documentation built on May 1, 2019, 9:19 p.m.
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Description Usage Arguments Value Examples
Description
Loads the imported blast results, extracts desired columns, Create new column of ratio between hit length to query length - higher as denominator, adjusts pID by this ratio. Any AMR results are removed from the returned df.
Usage
1 | blast_parser(blast.results)
|
Arguments
blast.results |
Blast results loaded from read_blast or Global Env |
Value
Blast table with pID adjusted by ratio of hit length to query length (larger as denominator)
Examples
1 2 3 4 | ## Not run:
blast_parser(blastdata)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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