Description Usage Arguments Value Examples
Combines blast and SRST2 results, cuts to desired columns (Sample, Plasmid, Inc_group, Coverage, Divergence, Length, Clusterid), matches plasmids to BR and appends simplified INC names, all future modifications are done to this dataframe
1 | combine_results(sr, br)
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sr |
SRST2 results loaded from read_srst2 |
br |
Blast results parsed by blast_parser |
Seven column dataframe of SRST2 results now including INC groups
1 2 3 4 | ## Not run:
combine_results(example_srst2_results, example_blast_results)
## End(Not run)
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