combine_results: Combines SRST2 and Blast results into a single dataframe
In Plasmidprofiler: Visualization of Plasmid Profile Results
Description
Usage
Arguments
Value
Examples
Description
Combines blast and SRST2 results, cuts to desired columns (Sample,
Plasmid, Inc_group, Coverage, Divergence, Length, Clusterid), matches
plasmids to BR and appends simplified INC names, all future
modifications are done to this dataframe
Usage
1
combine_results(sr, br)
Arguments
sr
SRST2 results loaded from read_srst2
br
Blast results parsed by blast_parser
Value
Seven column dataframe of SRST2 results now including INC groups
Examples
1
2
3
4
## Not run:
combine_results(example_srst2_results, example_blast_results)
## End(Not run)
Plasmidprofiler documentation built on May 1, 2019, 9:19 p.m.
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Description Usage Arguments Value Examples
Description
Combines blast and SRST2 results, cuts to desired columns (Sample, Plasmid, Inc_group, Coverage, Divergence, Length, Clusterid), matches plasmids to BR and appends simplified INC names, all future modifications are done to this dataframe
Usage
1 | combine_results(sr, br)
|
Arguments
sr |
SRST2 results loaded from read_srst2 |
br |
Blast results parsed by blast_parser |
Value
Seven column dataframe of SRST2 results now including INC groups
Examples
1 2 3 4 | ## Not run:
combine_results(example_srst2_results, example_blast_results)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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