optimize_n_eff: Translate efficiency to number of subjects

In PopED: Population (and Individual) Optimal Experimental Design

Description

optimize HOW MANY n there should be to achieve efficiency=1 compared to a reference OFV

Usage

optimize_n_eff(poped.db, ofv_ref, norm_group_fim = NULL, ...)

Arguments

poped.db	A PopED database.
ofv_ref	A reference OFV value to compare to.
norm_group_fim	The FIM per individual in each design group. If NULL, then these are computed.
...	Arguments passed to evaluate.fim and efficiency.

Value

The number of individuals needed.

Examples

# 2 design groups with either early or late samples
poped.db <- create.poped.database(ff_fun=ff.PK.1.comp.oral.sd.CL,
                                  fg_fun=function(x,a,bpop,b,bocc){
                                    parameters=c(CL=bpop[1]*exp(b[1]),
                                                 V=bpop[2]*exp(b[2]),
                                                 KA=bpop[3]*exp(b[3]),
                                                 Favail=bpop[4],
                                                 DOSE=a[1])
                                    return(parameters) 
                                  },
                                  fError_fun=feps.add.prop,
                                  bpop=c(CL=0.15, V=8, KA=1.0, Favail=1), 
                                  notfixed_bpop=c(1,1,1,0),
                                  d=c(CL=0.07, V=0.02, KA=0.6), 
                                  sigma=c(0.01,0.25),
                                  xt=list(c(1,2,3),c(4,5,20,120)),
                                  groupsize=50,
                                  minxt=0.01,
                                  maxxt=120,
                                  a=70,
                                  mina=0.01,
                                  maxa=100)


plot_model_prediction(poped.db)

evaluate_design(poped.db)


# what are the optimal proportions of 
# individuals in the two groups in the study?
(n_opt <- optimize_groupsize(poped.db))

# How many individuals in the original design are needed to achieve an
# efficiency of 1 compared to the optimized design with n=100?
optimize_n_eff(poped.db,
               ofv_ref=n_opt$opt_ofv_with_n)

PopED documentation built on May 21, 2021, 5:08 p.m.