Lfdr: Local False Discovery Rate Estimation

In REBayes: Empirical Bayes Estimation and Inference

Local False Discovery Rate Estimation

Description

A Generic function for estimation of Local FDR

Usage

Lfdr(G, ...)

## S3 method for class 'GLVmix'
Lfdr(G, newdata, cnull, tail = "R", ...)

## S3 method for class 'WGLVmix'
Lfdr(G, newdata, cnull, tail = "R", ...)

## S3 method for class 'GLmix'
Lfdr(G, newdata, cnull, tail = "R", ...)

Arguments

G	A fitted object from some G-modeling function.
...	other arguments
newdata	data frame to in which to evaluate Lfdr
cnull	threshold for evaluation of Lfdr
tail	either "R" or "L" to specify tail focus

Details

Given an estimated mixing distribution, G, Lfdr computes an estimated local false discovery rate at a specified set of points and threshold value cnull. The argument G can be specified as the fitted object from one of several possible fitting routines for nonparametric mixing distributions.

REBayes documentation built on Aug. 19, 2023, 5:10 p.m.