Description Usage Arguments Details Value Author(s) References See Also Examples

Compute matches for RFLP data using FragMatch - a program for the analysis of DNA fragment data.

1 2 |

`newData` |
data.frame with new RFLP data; see |

`refData` |
data.frame with reference RFLP data; see |

`maxValue` |
numeric: maximum value for which the error bound is applied. Can be a vector of length larger than 1. |

`errorBound` |
numeric: error bound corresponding to |

`weight` |
numeric: weight for weighting partial matches; see details section. |

`na.rm` |
logical: indicating whether NA values should be stripped before the computation proceeds. |

A rather simple algorithm which consists of counting the number of matches where
it is considered a match if the value is inside a range of +/- `errorBound`

.

If there is more than one enzyme, one can use weights to give the partial perfect matches for a certain enzyme a higher (or also smaller) weight.

A character matrix with entries of the form `"a_b"`

which means that there
were `a`

out of `b`

possible matches.

Mohammed Aslam Imtiaz, Matthias Kohl Matthias.Kohl@stamats.de

T. A. Saari, S. K. Saari, C. D. Campbell, I. J Alexander, I. C. Anderson. FragMatch - a program for the analysis of DNA fragment data. Mycorrhiza 2007, 17:133-136

1 2 3 4 | ```
data(refDataGerm)
data(newDataGerm)
res <- FragMatch(newDataGerm, refDataGerm)
``` |

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